Boinc CPU Usage Question
In general you never want to assign all your threads/cores to BOINC, Folding at Home or any other such Distributed Computing Application.
You always should leave at a bare minimum (for say a headless Linux System) one thread free for the OS. OSes with more overhead (say a Linux Desktop running X-Windows) will typically need more resources and Windows tends to need more than a Linux System.
This will vary depending on the projects being run and the only way to tell for sure is to run a new project with say 1/2 your available threads and slowly increase the number of threads closely monitoring the yield and see if you hit a point of diminishing returns when approaching using all available threads or, in many cases, see your yields start to dramatically decrease at that point as your system is "thrashing" trying to juggle the Distributed Computing tasks and the overhead needed by the OS.
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