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So in theory, your computer will still boot from the SSD, but the best course of action is to wipe the HDD. You can do this by booting to the SSD, then plugging the HDD in (be careful, but it's safe to do). Then when the drive shows up in Windows, you'll want to delete all partitions and create one new large partition, then format said partition and assign a drive letter (usually D:\ for a second drive).

 

This can be done in numerous ways. Within Windows you can use DISKPART (via Command Prompt), or you can use Windows Disk Management. You can also use any number of free or paid third party Partition/HDD management tools.

 

Your BIOS may also be able to specify drive boot preference after both drives are plugged in, but I would wipe the HDD regardless.

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