Folding@Home auto on/off with external Signal
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Solved by Eigenvektor,
The "FAHControl" program has the ability to control all kinds of things over port 36330 on remote systems. So yes that is possible, you just have to read a bit into their protocol.
Here's an intro to their API: https://github.com/FoldingAtHome/fah-control/wiki/3rd-party-FAHClient-API. If you look around a bit, there should be libs for some programming languages.
~edit: If you get the signal on the same machine the client is running, it's probably easier to use their CLI, e.g.
./FAHClient --send-pause ./FAHClient --send-unpause
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