CPU PCI-E Lanes
Alright, sorry I didn't include this before.
Say the motherboard has 2 PCI-E 3.0 slots and 1 PCI-E 2.0 Slot
Let's say there are 2 or 3 more PCI-E 1X slots.
The motherboard's PCI-E configuration is this: 16X/0X/0X 8X/8X/0X 8X/4X/4X
The motherboard does not have a PLX chip.
The two PCI-E 3.0 slots are populated with nVIDIA GPUs which uses ^ (8X/8X/0X)
If I plug in a PCI-E 3.0 1X device in one of the 1X slots or the PCI-E 2.0 slot (or maybe multiple 1X devices) what will happen/will the computer still work?
Sorry if I'm just repeating my question uselessly all over again.
Guess I'll give the simple answer since no one else seems to want to.
The CPU provides 16 PCIe 3.0 lanes, these are usually used for x16 slots. However this is not the only source of PCIe lanes. The motherboard chipset also has 8 PCIe 2.0 lanes for auxiliary functions.
x1 slots are wired through the motherboard chipset, and as such they won't affect the CPU lanes. Therefore you can still run x8/x8 graphics cards along with an x1 card.
The x4 slot is PCIe 2.0, which means it's still routed through the motherboard chipset, so there will be no difference if you plug an additional card into that slot as well.

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