How do I automatically boot ubuntu?
Also, if you've got a Pi3 + (A+ or B+), the heatspreader does a surprisingly good job of helping keep the chip cool compared to older models. Airflow is still always good, but even if it gets too hot it'll just turn the clocks down a bit.
EDIT:
But going back to the original question, if you have a Pi3 B+ and also have the PoE hat for it, you can try to automate PoE on that particular port of the switch as a way of turning the Pi on without physical intervention. Since you are shutting down the Pi via software right now, you'd probably want to just "flick" the PoE off and on to start it up. Once the Pi is getting power, Ubuntu will boot itself as per normal.
Like others have said, due to the hardware limitations of the Pi (a search for "Pi Wake On Lan" brings up similar discussions), the only real way to get it to boot on it's own is to power cycle the device. PoE is one of the more convenient ways to do that.

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