CCleaner
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Solved by Naeaes,
The 'recent documents' refers to the globally maintained (by windows itself) recent files list. It consists of actual .lnk files and those are what CCleaner deletes if the option is enabled. So as DimasRMDO noted, only the .lnk files are removed, not the actual files that they point to.
MSOffice and other softwares also maintain their own lists internally. No .lnk files but something similar-ish, likely a .dll -file in their %appdata% folders. I don't have MSOffice installed myself so I can't test, but there's likely something to untick in the 'applications' list in CCleaner. If there's nothing relating To MSOffice in 'applications' you can also manually find the correct folder in %appdata% and add that in the 'Exclude' list in the CCleaner options.

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