Issues with grub menu
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Solved by Ralphred,
So, it sounds like grub is looking for the boot or efi directory on the USB stick.
If you need it to boot, insert it and let it boot (but boot the the "eMMC version" of the OS if you can).
You can then use grub-install with the --boot-directory= or the --efi-directory= switch so that they point to the eMMC and not the USB stick.
These two sections of the gentoo handbook cover manual grub installation, but if you get stuck tell us whether you are BIOS or UEFI booting and then instructions can be more tailored to your set-up.

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