changing the file system
I've found the solution ! for any one that is still facing this problem, regarding to the boot issue : this is because the HDD inside the caddy had a windows 10 copy in it, and my bios cant let me rearrange the boot order so I completely wiped it and it worked.
regarding to the file system : its true, you should make sure that bot of them are having the same one (NTFS in my situation), this could be accomplished on the disk with the OS on it by reinstalling a new version of windows with this file system on it, or you can keep it as it is and reformat the external one with the file system that your OS is on.
NOTE : after all of this the hard drive in the caddy didn't show up until I flipped a switch in the caddy that I didn't know any thing about, this switch could be found on the top of the left side of the caddy if you are holding it with the drive facing you and the connector is up.
happy storaging

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