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So, my motherboard died... Had to replace it with an old one while waiting for the new one to arrive. Problem is, the board that's in my system now only has a single fan connector. Should I prioritize intake or exhaust? Front or back? The case I am using is a Fractal Design Core 2500, if that is relevant. 

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If it's only temporary then it's not a big deal. Probably rear exhaust would pull away from the cpu a bit better depending on what type of cooler you have. Medium-long term it's a much better idea to prioritize intake as it will reduce the amount of dust you will accumulate. How soon will the new board arrive? If it's within a month then just do rear exhaust(or really whatever is the least amount of effort.)

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