struggling with Plex on FreeNAS

[SxID117]

I am currently running the Plex plugin (11.3-RELEASE-p14) on FreeNAS (FreeNAS-11.3-U5) and i am having trouble getting all of my media to show up inside of plex. I am using 2 pools for storage as I have 2 different drive sizes and it wouldn't allow me to put them into a single pool. I made 2 different mount points one for the folder inside of each pool and made the destination for both mounts the media folder inside of plex but only the files from Pool2 are showing up and not any of my files from Pool1, i thought this might be because I need to point them to different folders but i dont know how to add a folder inside of plex to do that and if that isn't how its done i could seriously use some help. This is my first real experience with FreeNAS and really Linux in general.