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I'll cut right to it:
 
When I started up my computer this morning, I was greeted with the windows repair screen (windows 10, 64 bit) with the settings to run CMD, and other programs, etc. I got a little freaked out, tried all the settings, ran a bunch of programs in CMD, but nothing would work. Anyways, I figured my last shot was hoping to reinstall windows, that was worse case scenario. I couldn't figure out how to do anything else. Regardless, I moved to my BIOS boot screen and mistaken chose my SSD, where my windows is installed, anyways, my SSD is the same manufacturer as the USB I was using to install windows. I booted off of my hard drive again, but this time it came up with a windows logo and stated something about repairing windows, a bunch of file names popped up and went away, and just like that I was on the login screen. As far as I could tell there was no issues doing what I would normally do, (gaming, etc) but just recently I restarted my computer (same day) and had to go through the cycle again.
 
Computer Specs:
i5 4690k
mobo: msi gaming 3 z97
gpu : EVGA SSC 1060 3gb
hdd: 1tb seagate and 120gb sandisk ssd
psu : 500 w evga bronze
ram :  12 gb ddr3 1600mhz
 
Running the most current bios version...
 
Not quite sure what to do. Opinions are greatly appreciated!
 
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How do you turn off your system? If you have a hard crash when you're say overclocking, or you suddenly remove power, or hold the power button to force a shutdown , windows views this as windows suddenly crashing for unknown reasons, and because of this, at next boot, it will automatically launch this windows repair to try and fix a problem that doesn't actually exist (it just thinks there is).

Gaming - Ryzen 9800X3D | 64GB 6400mhz cl30 9070 XT

Homelab - many servers...constantly changing. 

3970X/256GB - 5950X/128GB ECC - 5600G/96GB - 3400GE/16GB - 3400GE/16GB

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2 minutes ago, suchamoneypit said:

How do you turn off your system? If you have a hard crash when you're say overclocking, or you suddenly remove power, or hold the power button to force a shutdown , windows views this as windows suddenly crashing for unknown reasons, and because of this, at next boot, it will automatically launch this windows repair to try and fix a problem that doesn't actually exist (it just thinks there is).

How would you go about telling windows that there isn't any problem, then? That's what's got me a bit confused.

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16 minutes ago, chickentendie44 said:

How would you go about telling windows that there isn't any problem, then? That's what's got me a bit confused.

You don't. You let it do its check and then proceed to boot normally  after it finds nothing wrong, and don't do whatever you were doing before which made it think there was an issue so you don't have to wait next time.  That's if this is your problem. I don't know, if its something else causing this, then you have an actual problem you need to fix.

Gaming - Ryzen 9800X3D | 64GB 6400mhz cl30 9070 XT

Homelab - many servers...constantly changing. 

3970X/256GB - 5950X/128GB ECC - 5600G/96GB - 3400GE/16GB - 3400GE/16GB

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