Weird HDD Overheating Problem.
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Solved by alpenwasser,
If I've read correctly, your HDD is around 40 C now, that's nothing to worry about.
Your drive is spec'd for up to 60 deg C ambient temperature and 69 deg C drive case
temperature (page 17): http://www.seagate.com/staticfiles/support/docs/manual/desktop/Barracuda%207200.12/100672652b.pdf
Although personally I try to keep my HDDs below 50 C.
EDIT:
Oh, just got your second post. That's a bit hotter, but still tolerable according
to the specs. There isn't really that much you can do besides improving ventilation
for the drive or relocating it, which I guess is not an option.

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