980 ti Bios Problem
You could always use NVFlash to reflash a BIOS but that comes with risks (like every BIOS flash).
But slightly different clock speeds are not unusual since GPU Boost doesn't always works 100% the same and the GPU's also most probably have different temperatures.
Even if they wouldn't they don't always have to match and it will help also with mico stuttering if they don't.
For exable with the stock BIOS and no OC my both 680s would run on 1175MHz and 1136MHz (ish) and they are in parallel in the same liquidloop and had the exact same temperature.
If you don't have any critical performance issues I would just leave is as it is.
Even tho they are EVGS SC cards i have flashed the stock 680 BIOS with 1006MHz base clock.
Like i said same cards, same cooling, same temperature, same voltage, same BIOS. But my current clocks with 3D Mark are 1084MHz and 1071MHz.
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