motherboard How does a GPU pull power out of a motherboard?
PCIe slots are always capable of providing power and if you get a sound card it doesn't have a PSU direct connection, it powers entirely from the motherboard which in turn is powered from the 24pin ATX connector.
Graphics cards however pull more power than the motherboard can reasonably provide, because the traces in copper across the board and especially the pins of the slot are limited in the amps they can carry to around 1.1A per pin. The PCIe specification defines what slots must be capable of and what cards will maximally attempt to draw and there is a certification process in place to stop either side from releasing products that break the spec. For a full length PCIe slot its 75W total, 66W of which is 12V and the rest is 3.3V. But its only 25W for a 1x slot.
What the PCIe specification also provides is the details of what additional power can be drawn from the PSU for cards. The 6 pin can be used to draw 75W and the 8 pin can be used to draw 150W. A card can also use 2x 6 pin or a 6 pin and an 8 pin for a total of 300W (75W slot + 75W 6 pin + 150W 8 pin). It doesn't define in its standard the 375W option that is clearly possible if you use 2x 8pin connectors.
How does this relate to the RX 480? Well despite its specified TDP of 150W the card will consistently pull more than that in some scenarios, up to 170W. Since it has a 6 pin connector (75W maximum) and the PCIe slot (75W maximum) its clearly out of spec, its drawing more power than its allowed. Before the patch it pulled that power pretty equally from the slot and the 6 pin connector. This pushed both out of spec but the motherboard side of things is more concerning because they really aren't designed to be a big source of power and no card has ever overdrawn from the slot before and when pcper asked the motherboard manufacturers they were concerned it could cause damage.
On the other hand we have had multiple cards pull more than 75W out of a 6 pin connector, its not common but its certainly happened before especially with AIB cards. The PSU 6 pin connectors make better contact and are made of better materials and hence often can provide a lot more power, although it really depends on your PSU and whether it supports the updated standards for the higher quality connectors, thicker than the minimum cabling and the appropriate support internally to actually deliver the power. Its very common to find PSUs supporting more so its less concerning for the power to be pulled from there. Its important to note however that the card remains outside the PCIe specification and it ought to be rated as a 170W TDP and use an 8 pin connector or 2x 6 pins.
So the fix for the rx 480 is two options. With the new driver the excess power will be pulled from the 6 pin and not the PCIe slot (although AMD has failed still to meet the specification for the PCIe slot but its reduced it at least- http://www.pcper.com/reviews/Graphics-Cards/AMD-Radeon-RX-480-Power-Consumption-Concerns-Fixed-1671-Driver/Power-Testing-). It also provides a compatibility mode that constrains the power of the GPU to 155W total (but its still out of spec on the PCIe slot again overdrawing on 12V current and also still on the 6 pin as well). So while the problem has partly been fixed the testing of it shows its still not actually in specification.
TLDR is the RX 480 pulls too much power from all its power sources and even after the fix it still does. This could cause damage to the motherboard and the PSU, their protection mechanism is that the specification defends them but AMD has thrown the spec out and is just doing its own thing and its causing motherboard manufacturers to be concerned about damage.
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