It was the "Nahimic Service", specifically Sonic Studio and Sonic Radar. Once I uninstalled Sonic Studio and Sonic Radio my programs opened like normal.
So I've decided to do a Clean Boot after reading something through search. Disabling all non-Windows apps has fixed the problem. I'm currently going through the last of startup applications one by one to see which one is causing the issue.
As of now the disabling sound on start up is the Corsair iCUE program. But it is not effecting my programs from opening. Will update when I complete this.