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ASUS X99 Delux not showing all cores

I have an I7 5930k and my board is only showing 3 cores and 3 threads for a total of 6.  I just updated to the newest BIOS 0904 but I am unsure if it was doing this before.  If I go into the device manager under processor it shows 12 cores but everything else (CPU-Z,AI Suite,AID64) are all showing but 3 and 3.  I didnt see anything in the Bios settings but maybe I missed something.

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try resetting the bios

CPU- i7 5960x MOTHERBOARD- Asus Rampage V extreme RAM- 32gb Corsair Dominator Platinum ddr4 2800mhz GPU-  2X EVGA GTX 980 SC in SLI PSU- Corsair ax860 CASE- Corsair Obsidian 750d COOLING- EK cpu+dual gpu custom loop (ek supremacy evo, dual gtx 980 copper/acetal waterblocks) MOUSE- Logitech g502 proteus core KEYBOARD- Ducky shine 3 cherry mx blue switches and blue LED MONITOR- Samsung u28d590d UHD  STORAGE -  120 gb samsung 850 evo ssd, 960 gb ocz trion ssd OS- Windows 10 pro http://pcpartpicker.com/p/jtP8GX

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open msconfig -> go to Boot tab -> Click on advanced options and see if there is a set processor limit, if not see if you can force all the cores from there.

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Thanks Patyo, I forgot I was messing in there a few days ago.  This is my first week with my new hardware so I panic whenever something like this happens lol

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